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 national ecological observatory network


Interview with AAAI Fellow Tanya Berger-Wolf: AI for ecology, biodiversity, and conservation

AIHub

Each year the AAAI recognizes a group of individuals who have made significant, sustained contributions to the field of artificial intelligence by appointing them as Fellows. Over the course of the next few months, we'll be talking to some of the 2026 AAAI Fellows. In this interview, we met with Tanya Berger-Wolf, who was elected as a Fellow . We found out about her latest research developing a foundation model for biology, the insights this model can provide, interesting collaborations over the years, and what the future has in store. Could you start with a quick introduction and tell us about the broad area that you're working in? My area of research is in AI for ecology, biodiversity, and conservation.


FLUXtrapolation: A benchmark on extrapolating ecosystem fluxes

arXiv.org Machine Learning

We introduce FLUXtrapolation, a benchmark for extrapolating ecosystem fluxes under progressively harder distribution shifts. Ecosystem fluxes are central to understanding the carbon, water, and energy cycles, yet they can only be measured directly at sparsely located measurement towers. Producing global flux estimates therefore requires training models on observed sites using globally available covariates and predicting in unobserved regions, that is, upscaling. Flux upscaling is a challenging domain generalization problem that is affected by a shift in covariate distribution across climates, ecosystem types, and environmental conditions, as well as by conditional shift: important drivers remain unobserved at global scale. We provide a quantitative analysis of both these shifts in $P_X$ and $P_{Y\mid X}$. FLUXtrapolation is designed based on domain expertise on flux upscaling: it defines temporal, spatial, and temperature-based extrapolation scenarios and evaluates performance across held-out domains, temporal aggregations, and tail errors. In a pilot study, we find that baselines perform similarly under median hourly RMSE, but separate under the proposed tail-focused and multi-scale evaluation. FLUXtrapolation therefore poses a realistic and thus relevant challenge for machine learning methods under distribution shift; at the same time, progress on this benchmark would directly support the scientific goal of improving flux upscaling.


CarbonSense: A Multimodal Dataset and Baseline for Carbon Flux Modelling

arXiv.org Artificial Intelligence

Terrestrial carbon fluxes provide vital information about our biosphere's health and its capacity to absorb anthropogenic CO$_2$ emissions. The importance of predicting carbon fluxes has led to the emerging field of data-driven carbon flux modelling (DDCFM), which uses statistical techniques to predict carbon fluxes from biophysical data. However, the field lacks a standardized dataset to promote comparisons between models. To address this gap, we present CarbonSense, the first machine learning-ready dataset for DDCFM. CarbonSense integrates measured carbon fluxes, meteorological predictors, and satellite imagery from 385 locations across the globe, offering comprehensive coverage and facilitating robust model training. Additionally, we provide a baseline model using a current state-of-the-art DDCFM approach and a novel transformer based model. Our experiments illustrate the potential gains that multimodal deep learning techniques can bring to this domain. By providing these resources, we aim to lower the barrier to entry for other deep learning researchers to develop new models and drive new advances in carbon flux modelling.


weecology/DeepForest-pytorch

#artificialintelligence

DeepForest is a python package for training and predicting individual tree crowns from airborne RGB imagery. DeepForest comes with a prebuilt model trained on data from the National Ecological Observatory Network. Users can extend this model by annotating and training custom models starting from the prebuilt model. The machine learning community is moving more towards pytorch, where many new models can be found. Tree detection is a central task in forest ecology and remote sensing.